IW Meeting 2013-08-08

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IW Meeting 2013-08-08


Meeting Information



Meeting Preparation

Around the room

* Add a section for yourself 2 hours before meeting.
* Mark any discussion point that you would like to raise during meeting (with DURING MEETING). 
* Otherwise, assume that others will read the rest before meeting. 
* Also, please be considerate and read others' discussion points before the meeting starts.


Will be Skyping with Cynthia at 2:30pm to discuss spreadsheet.


1.5M nanopubs with provenance in drug repurposing project.







Got AGU submission submitted for OPeNDAP provenance The OPeNDAP folks are very interested and are working to get something into the DAP4 spec Also got a ToolMatch submission in. No real software. A CMAP somewhere but not very far. Supposed to be crowdsourced. SADI automatic workflow composition using ontologies (RDF in, RDF out), the SHARE client



Tim + Cynthia https://docs.google.com/spreadsheet/ccc?key=0ArTeDpS4-nUDdFdBYkRUQ0hvUWFpTy1ObjlZSTJEaXc#gid=0

row 66 hasContent ACCEPTED "adopted" as prov:specializationOf.

row 69 hasEncoding

  • ACCEPTED pml:encoding domain is prov:Entity
    • "encoding" goes along with prov:value, whose domain is prov:Entity
    • Agents are not code, they are running/embodiying Plans, so Agents cannot have prov:value "direct representations".
    • Also considered an undefined (owl:Thing) domain, but chose prov:Entity for the above two reasons.
  • TODO pml:encoding range resource (with range rdfs:Datatype )

row 98 ACCEPTED to POSTPONE hasConfidenceValue confidence is a very contextual attribute, and that context should be modeled properly

row 111 ACCEPTED to postpone hasMetaBinding

row 119 ACCEPTED to deprecate NodeSetList in favor of pml:atIndex on an Influence e.g. Usage.

row 120 ACCEPTED To deprecate NodeSet in favor of directly referencing the pml:Information.

row 112 propose to postpone hasDischarge ASK DEBORAH here

row 121 ACCEPTED to adopt pmlj:hadConclusion as pml:concluded subpropertyof prov:generated; domain pml:InferenceStep; range Information .

row 105 ACCEPTED to rename pml:hadAntecedent to pml:usedAntecedent.

row 123 ACCEPTED to postpone isExplanationOf

row 122 ACCEPTED to rename isConsequentOf to pml:wasConcludedBy owl:inverseOf pml:concluded; rdfs:subPropertyOf prov:wasGeneratedBy .

row 126 ACCEPTED to replace isQueryFor with best practices prov:alternateOf and an optional prov:wasDerivedFrom.

row 129 ACCEPTED pml:Question is a subclass of pml:Information.

row 102 fromAnswerOrQuery / fromAnswer / fromQuery

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